Aquatic plants take up nutrients through two primary means--through the roots and from the water column directly. Some plants (such as crypts or swords) are heavy root feeders and will have extensive root systems for anchoring and nutrient collection. Others (i.e., those with shallow root systems) rely more heavily on collecting nutrients primarily through the leaves. Regardless of whether you use dry or liquid ferts, the ferts will dilute in the water and be made available to all the plants. That is, if you squirt liquid ferts into one end of the tank, it will eventually dilute until the injected liquid has a equal consistency throughout (equilibrium through osmosis). You can target specific plants (i.e., root feeders) by supplementing with root tabs and make more nutrients more directly available and cause the plants to grow faster.
All that said, I don't think it's necessary to mess with your substrate. Just figure out a good consistent fertilizing method and stick to it. Many of us in the states employ the Estimative Index (EI) method. For more info, go
here. HTH
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